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1

[Methods in Molecular Biology] RNA Editing Volume 2181 (Methods and Protocols) || RNA Editing in Neurological and Neurodegenerative Disorders

Picardi, Ernesto, Pesole, Graziano

Year:

2021

File:

PDF, 386 KB

2021

2

The guinea-pig is not a rodent

D'Erchia, Anna Maria, Gissi, Carmela, Pesole, Graziano, Saccone, Cecilia, Arnason, Ulfur

Journal:

Year:

1996

File:

PDF, 908 KB

1996

3

[Methods in Molecular Biology] RNA Editing Volume 2181 (Methods and Protocols) ||

Picardi, Ernesto, Pesole, Graziano

Year:

2021

File:

PDF, 9.06 MB

2021

4

What is a gene? An updated operational definition

Graziano Pesole

Journal:

Year:

2008

Language:

english

File:

PDF, 598 KB

english, 2008

5

Mitogenomics reveals two cryptic species in Ciona intestinalis

Fabio Iannelli, Graziano Pesole, Paolo Sordino, Carmela Gissi

Journal:

Trends in Genetics

Year:

2007

Language:

english

File:

PDF, 342 KB

english, 2007

6

Phylogenetic analyses of complete mitochondrial genome sequences suggest a basal divergence of the enigmatic rodentAnomalurus

David S Horner, Konstantinos Lefkimmiatis, Aurelio Reyes, Carmela Gissi, Cecilia Saccone, Graziano Pesole

Journal:

BMC Evolutionary Biology

Year:

2007

Language:

english

File:

PDF, 342 KB

english, 2007

7

REDIdb 3.0: A Comprehensive Collection of RNA Editing Events in Plant Organellar Genomes

Lo Giudice, Claudio, Pesole, Graziano, Picardi, Ernesto

Journal:

Frontiers in Plant Science

Year:

2018

Language:

english

File:

PDF, 2.93 MB

english, 2018

8

Analysis of oligonucleotide AUG start codon context in eukariotic mRNAs

Graziano Pesole, Carmela Gissi, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Cecilia Saccone

Journal:

Year:

2000

Language:

english

File:

PDF, 605 KB

english, 2000

9

VDR primary targets by genome-wide transcriptional profiling

Goeman, Frauke, De Nicola, Francesca, D’Onorio De Meo, Paolo, Pallocca, Matteo, Elmi, Berardino, Castrignanò, Tiziana, Pesole, Graziano, Strano, Sabrina, Blandino, Giovanni, Fanciulli, Maurizio, Muti,

Journal:

The Journal of Steroid Biochemistry and Molecular Biology

Year:

2014

Language:

english

File:

PDF, 1.28 MB

english, 2014

10

Laniakea: an open solution to provide Galaxy âon-demandâ instances over heterogeneous cloud infrastructures

Tangaro, Marco Antonio, Donvito, Giacinto, Antonacci, Marica, Chiara, Matteo, Mandreoli, Pietro, Pesole, Graziano, Zambelli, Federico

Journal:

Year:

2020

File:

PDF, 3.61 MB

2020

11

Towards global interoperability for supporting biodiversity research on essential biodiversity variables (EBVs)

Kissling, W. Daniel, Hardisty, Alex, García, Enrique Alonso, Santamaria, Monica, De Leo, Francesca, Pesole, Graziano, Freyhof, Jörg, Manset, David, Wissel, Silvia, Konijn, Jacco, Los, Wouter

Journal:

Year:

2015

Language:

english

File:

PDF, 742 KB

english, 2015

12

Changes in Escherichia coli transcriptome during acclimatization at low temperature

Alessandra Polissi, Walter De Laurentis, Sandro Zangrossi, Federica Briani, Vera Longhi, Graziano Pesole, Gianni Dehò

Journal:

Research in Microbiology

Year:

2003

Language:

english

File:

PDF, 261 KB

english, 2003

13

Investigating RNA editing in deep transcriptome datasets with REDItools and REDIportal

Lo Giudice, Claudio, Tangaro, Marco Antonio, Pesole, Graziano, Picardi, Ernesto

Journal:

Nature Protocols

Year:

2020

Language:

english

File:

PDF, 1.14 MB

english, 2020

14

[Methods in Molecular Biology] RNA Editing Volume 2181 (Methods and Protocols) || High-Throughput Sequencing to Detect DNA-RNA Changes

Picardi, Ernesto, Pesole, Graziano

Year:

2021

File:

PDF, 309 KB

2021

15

The Microbial Community Associated with Rhizostoma pulmo: Ecological Significance and Potential Consequences for Marine Organisms and Human Health

Stabili, Loredana, Rizzo, Lucia, Basso, Lorena, Marzano, Marinella, Fosso, Bruno, Pesole, Graziano, Piraino, Stefano

Journal:

Year:

2020

File:

PDF, 1.84 MB

2020

16

Evolution of the mitochondrial genetic system: an overview

Cecilia Saccone, Carmela Gissi, Cecilia Lanave, Alessandra Larizza, Graziano Pesole, Aurelio Reyes

Journal:

Year:

2000

Language:

english

File:

PDF, 286 KB

english, 2000

17

ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences

Santamaria, Monica, Fosso, Bruno, Licciulli, Flavio, Balech, Bachir, Larini, Ilaria, Grillo, Giorgio, De Caro, Giorgio, Liuni, Sabino, Pesole, Graziano

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 989 KB

english, 2017

18

Genome sequencing of multiple isolates highlights sub-telomeric genomic diversity within Fusarium fujikuroi

Chiara, Matteo, Fanelli, Francesca, Mulè, Giuseppina, Logrieco, Antonio F., Pesole, Graziano, Leslie, John F., Horner, David S, Toomajian, Christopher

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.07 MB

english, 2015

19

Linguistic approaches to the analysis of sequence information

Graziano Pesole, Marcella Attimonelli, Cecilia Saccone

Journal:

Trends in Biotechnology

Year:

1994

Language:

english

File:

PDF, 728 KB

english, 1994

20

Nucleotide Substitution Rate of Mammalian Mitochondrial Genomes

Graziano Pesole, Carmela Gissi, Anna De Chirico, Cecilia Saccone

Journal:

Journal of Molecular Evolution

Year:

1999

Language:

english

File:

PDF, 322 KB

english, 1999

21

Handbook of Comparative Genomics (Principles and Methodology) || Molecular Evolution

Saccone, Cecilia, Pesole, Graziano

Year:

2003

Language:

english

File:

PDF, 2.96 MB

english, 2003

22

Elucidating the editome: bioinformatics approaches for RNA editing detection

Diroma, Maria Angela, Ciaccia, Loredana, Pesole, Graziano, Picardi, Ernesto

Journal:

Briefings in Bioinformatics

Year:

2017

Language:

english

File:

PDF, 514 KB

english, 2017

23

Apolipoprotein(a): A Puzzling Evolutionary Story

Richard Lawn, Lazlo Patthy, Graziano Pesole, Cecilia Saccone

Journal:

Journal of Molecular Evolution

Year:

1997

Language:

english

File:

PDF, 96 KB

english, 1997

24

Energy biogenesis: one key for coordinating two genomes

Marco Sardiello, Gaetano Tripoli, Antonio Romito, Crescenzio Minervini, Luigi Viggiano, Corrado Caggese, Graziano Pesole

Journal:

Trends in Genetics

Year:

2005

Language:

english

File:

PDF, 134 KB

english, 2005

25

REDIportal: a comprehensive database of A-to-I RNA editing events in humans

Picardi, Ernesto, D'Erchia, Anna Maria, Lo Giudice, Claudio, Pesole, Graziano

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 3.09 MB

english, 2016

26

A Unique, Consistent Identifier for Alternatively Spliced Transcript Variants

Riva, Alberto, Pesole, Graziano, Valcarcel, Juan

Journal:

Year:

2009

Language:

english

File:

PDF, 594 KB

english, 2009

27

Enrichment of intestinal Lactobacillus by enhanced secretory IgA coating alters glucose homeostasis in P2rx7−/− mice

Perruzza, Lisa, Strati, Francesco, Gargari, Giorgio, D’Erchia, Anna Maria, Fosso, Bruno, Pesole, Graziano, Guglielmetti, Simone, Grassi, Fabio

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 2.07 MB

english, 2019

28

The importance of base composition in the correct assessment of genetic distance

Graziano Pesole, Grazia Dellisanti, Giuliano Preparata, Cecilia Saccone

Journal:

Journal of Molecular Evolution

Year:

1995

Language:

english

File:

PDF, 328 KB

english, 1995

29

Global immune disregulation in multiple sclerosis: from the adaptive response to the innate immunity

Giovanni Ristori, Chiara Montesperelli, Alessia Perna, Stefania Cannoni, Luca Battistini, Giovanna Borsellino, Paolo Riccio, Graziano Pesole, Alberto Chersi, Carlo Pozzilli, Carla Buttinelli, Marco Sa

Journal:

Journal of Neuroimmunology

Year:

2000

Language:

english

File:

PDF, 45 KB

english, 2000

30

WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences

Giulio Pavesi, Federico Zambelli, Graziano Pesole

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 755 KB

english, 2007

31

p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combiningin silicoprediction and microarray data

Elisabetta Sbisà, Domenico Catalano, Giorgio Grillo, Flavio Licciulli, Antonio Turi, Sabino Liuni, Graziano Pesole, Anna De Grassi, Mariano Francesco Caratozzolo, Anna Maria D'Erchia, Beatriz Navarro,

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 802 KB

english, 2007

32

[IEEE 2014 International Conference on High Performance Computing & Simulation (HPCS) - Bologna, Italy (2014.7.21-2014.7.25)] 2014 International Conference on High Performance Computing & Simulation (HPCS) - ODESSA: A high performance analysis pipeline for Ultra Deep targeted Exome Sequencing data

D'Antonio, Mattia, D'Onorio De Meo, Paolo, Castrignano, Tiziana, Erbacci, Giovanni, Pallocca, Matteo, Pesole, Graziano

Year:

2014

Language:

english

File:

PDF, 1.48 MB

english, 2014

33

Changes in gene expression and metabolic profile of drupes of Olea europaea L. cv Carolea in relation to maturation stage and cultivation area

Bruno, Leonardo, Picardi, Ernesto, Pacenza, Marianna, Chiappetta, Adriana, Muto, Antonella, Gagliardi, Olimpia, Muzzalupo, Innocenzo, Pesole, Graziano, Bitonti, Maria Beatrice

Journal:

BMC Plant Biology

Year:

2019

File:

PDF, 3.34 MB

2019

34

Bioinformatics in Italy: BITS2007, the fourth annual meeting of the Italian Society of Bioinformatics

Graziano Pesole, Manuela Helmer-Citterich

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 187 KB

english, 2008

35

Evolution of nuclearly encoded mitochondrial genes in Metazoa

Anna De Grassi, Corrado Caggese, Domenica D'Elia, Cecilia Lanave, Graziano Pesole, Cecilia Saccone

Journal:

Year:

2005

Language:

english

File:

PDF, 241 KB

english, 2005

36

Handbook of Comparative Genomics (Principles and Methodology) || Eukaryotes

Saccone, Cecilia, Pesole, Graziano

Year:

2003

Language:

english

File:

PDF, 4.06 MB

english, 2003

37

Draft Genome Sequences of Three Novel Staphylococcus arlettae Strains Isolated from a Disused Biological Safety Cabinet

Lavecchia, Anna, Chiara, Matteo, Manzari, Caterina, Trotta, Massimo, Marzano, Marinella, Horner, David, Pesole, Graziano, Placido, Antonio, Putonti, Catherine

Journal:

Microbiology Resource Announcements

Year:

2018

Language:

english

File:

PDF, 117 KB

english, 2018

38

Genetic structure of the long-snouted seahorse, Hippocampus guttulatus, in the CentralâWestern Mediterranean Sea

Lazic, Tamara, Pierri, Cataldo, Cardone, Frine, Cariani, Alessia, Colangelo, Paolo, Corriero, Giuseppe, Ferrari, Alice, Marzano, Marinella, Messinetti, Silvia, Pesole, Graziano, Senczuk, Gabriele, San

Journal:

Biological Journal of the Linnean Society

Year:

2020

File:

PDF, 866 KB

2020

39

Selection of relevant genes in cancer diagnosis based on their prediction accuracy

Rosalia Maglietta, Annarita D’Addabbo, Ada Piepoli, Francesco Perri, Sabino Liuni, Graziano Pesole, Nicola Ancona

Journal:

Artificial Intelligence in Medicine

Year:

2007

Language:

english

File:

PDF, 215 KB

english, 2007

40

Handbook of Comparative Genomics (Principles and Methodology) || Prokaryotes

Saccone, Cecilia, Pesole, Graziano

Year:

2003

Language:

english

File:

PDF, 2.64 MB

english, 2003

41

Whole transcriptome profiling of Late-Onset Alzheimer’s Disease patients provides insights into the molecular changes involved in the disease

Annese, Anita, Manzari, Caterina, Lionetti, Claudia, Picardi, Ernesto, Horner, David S., Chiara, Matteo, Caratozzolo, Mariano Francesco, Tullo, Apollonia, Fosso, Bruno, Pesole, Graziano, D’Erchia, Ann

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 1.74 MB

english, 2018

42

Changes in gene expression and metabolic profile of drupes of Olea europaea L. cv Carolea in relation to maturation stage and cultivation area

Bruno, Leonardo, Picardi, Ernesto, Pacenza, Marianna, Chiappetta, Adriana, Muto, Antonella, Gagliardi, Olimpia, Muzzalupo, Innocenzo, Pesole, Graziano, Bitonti, Maria Beatrice

Journal:

BMC Plant Biology

Year:

2019

Language:

english

File:

PDF, 3.34 MB

english, 2019

43

[Methods in Molecular Biology] RNA Editing Volume 2181 (Methods and Protocols) || MicroRNA Editing Detection and Function: A Combined In Silico and Experimental Approach for the Identification and Validation of Putative Oncogenic Targets

Picardi, Ernesto, Pesole, Graziano

Year:

2021

File:

PDF, 252 KB

2021

44

The Members of theRHGene Family (RH50andRH30) Followed Different Evolutionary Pathways

Matassi, Giorgio, Chérif-Zahar, Baya, Pesole, Graziano, Raynal, Virginie, Cartron, Jean-Pierre

Journal:

Journal of Molecular Evolution

Year:

1999

Language:

english

File:

PDF, 780 KB

english, 1999

45

Handbook of Comparative Genomics (Principles and Methodology) || Index

Saccone, Cecilia, Pesole, Graziano

Year:

2003

Language:

english

File:

PDF, 602 KB

english, 2003

46

Handbook of Comparative Genomics (Principles and Methodology) || Organelles

Saccone, Cecilia, Pesole, Graziano

Year:

2003

Language:

english

File:

PDF, 3.31 MB

english, 2003

47

Staphylococcus arlettae Genomics: Novel Insights on Candidate Antibiotic Resistance and Virulence Genes in an Emerging Opportunistic Pathogen

Lavecchia, Anna, Chiara, Matteo, De Virgilio, Caterina, Manzari, Caterina, Monno, Rosa, De Carlo, Armando, Pazzani, Carlo, Horner, David, Pesole, Graziano, Placido, Antonio

Journal:

Year:

2019

File:

PDF, 1.32 MB

2019

48

MitoZoa: A curated mitochondrial genome database of metazoans for comparative genomics studies

Renato Lupi, Paolo D’Onorio de Meo, Ernesto Picardi, Mattia D’Antonio, Daniele Paoletti, Tiziana Castrignanò, Graziano Pesole, Carmela Gissi

Journal:

Year:

2010

Language:

english

File:

PDF, 1.08 MB

english, 2010

49

Molecular Clock and Gene Function

Cecilia Saccone, Corrado Caggese, Anna Maria D’Erchia, Cecilia Lanave, Marta Oliva, Graziano Pesole

Journal:

Journal of Molecular Evolution

Year:

2003

Language:

english

File:

PDF, 151 KB

english, 2003

50

Structural and evolutionary analysis of the ribosomal genes of the parasitic nematode Meloidogyne artiellia suggests its ancient origin

Carla De Giorgi, Pasqua Veronico, Francesca De Luca, Angela Natilla, Cecilia Lanave, Graziano Pesole

Journal:

Molecular and Biochemical Parasitology

Year:

2002

Language:

english

File:

PDF, 194 KB

english, 2002

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